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Title Authors Journal Year
MS-CETSA functional proteomics uncovers new DNA-repair programs leading to Gemcitabine resistance Nordlund, P., Liang, Y. Y., Khalid, K., Van Le, H., Teo, H. M., Raitelaitis, M., ... & Prabhu, N. Research Square 2024
Untargeted proteomics and stage-specific Huntington’s disease reveal biological pathways, and potential protein biomarkers Papanicolaou, E. Z., Christodoulou, C., & Demetriou, C. Research Square 2024
High Levels of Oxidative Stress Early after HSCT Are Associated with Later Adverse Outcomes Cook, E., Langenberg, L., Luebbering, N., Ibrahimova, A., Sabulski, A., Lake, K. E., ... & Davies, S. M. Transplantation and Cellular Therapy 2024
Impaired phagocytosis of photoreceptor outer segments by RPE in CLN3 disease is a consequence of altered sphingolipid metabolism KUMAR, L. K., Han, J., Dalvi, S., Foley, N., Subedi, Y., & Singh, R. Investigative Ophthalmology & Visual Science 2024
White matter lipid alterations during aging in the rhesus monkey brain Dimovasili, C., Vitantonio, A. T., Conner, B., Vaughan, K. L., Mattison, J. A., & Rosene, D. L. GeroScience 2024
Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content Badoni, S., Pasion-Uy, E. A., Kor, S., Kim, S. R., Tiozon Jr, R. N., Misra, G., ... & Sreenivasulu, N. Proceedings of the National Academy of Sciences 2024
The Brain Metabolome Is Modified by Obesity in a Sex-Dependent Manner Norman, J. E., Milenkovic, D., Nuthikattu, S., & Villablanca, A. C. International Journal of Molecular Sciences 2024
UDP-Glucose/P2Y14 Receptor Signaling Exacerbates Neuronal Apoptosis After Subarachnoid Hemorrhage in Rats Kanamaru, H., Zhu, S., Dong, S., Takemoto, Y., Huang, L., Sherchan, P., ... & Zhang, J. H. Stroke 2024
Characterization of Dnajc12 knockout mice, a model of hypodopaminergia Deng, I. B., Follet, J., Fox, J. D., & Farrer, M. J. bioRxiv 2024
Pan-lysyl oxidase inhibition disrupts fibroinflammatory tumor stroma, rendering cholangiocarcinoma susceptible to chemotherapy Burchard, P. R., Ruffolo, L. I., Ullman, N. A., Dale, B. S., Dave, Y. A., Hilty, B. K., ... & Hernandez-Alejandro, R. Hepatology Communications 2024
Comparative metabolite profiling of salt sensitive Oryza sativa and the halophytic wild rice Oryza coarctata under salt stress Tamanna, N., Mojumder, A., Azim, T., Iqbal, M. I., Alam, M. N. U., Rahman, A., & Seraj, Z. I. Plant‐Environment Interactions 2024
Teriflunomide/leflunomide synergize with chemotherapeutics by decreasing mitochondrial fragmentation via DRP1 in SCLC Mirzapoiazova, T., Tseng, L., Mambetsariev, B., Li, H., Lou, C. H., Pozhitkov, A., ... & Salgia, R. iScience 2024
Protein interactors of Spindle Pole Body (SPB) components and septal proteins in fungus Neurospora crassa: A mass spectrometry-based dataset Espino-Vázquez, A. N., Cota, R. R., Callejas-Negrete, O. A., Fischer, R., & Mouriño-Pérez, R. R. Data in Brief 2024
Temperature stability of urinary F2-isoprostane and 8-hydroxy-2′-deoxyguanosine Kordas, K., Ghazal, D., Queirolo, E. I., Olson, J. R., Beledo, M. I., & Browne, R. W. Practical Laboratory Medicine 2024
Morphological and genetic screens reveal mechanisms of BiDAC-induced plasma membrane protein degradation Bersuker, K., Jafri, Q., Lazzari-Dean, J., Sangha, M., Villa, S., Lefebvre, A., ... & Stokoe, D. Research Square 2024
Regulation of cardiac ferroptosis in diabetic human heart failure: uncovering molecular pathways and key targets Gawargi, F. I., & Mishra, P. K. Cell Death Discovery 2024
Physiological, transcriptomic and metabolomic insights of three extremophyte woody species living in the multi-stress environment of the Atacama Desert Gajardo, H. A., Morales, M., Larama, G., Luengo-Escobar, A., López, D., Machado, M., ... & Bravo, L. A. Planta 2024
Extracellular vesicles regulate metastable phenotypes of lymphangioleiomyomatosis cells via shuttling ATP synthesis to pseudopodia and activation of integrin adhesion complexes Kalvala, A. K., Silwal, A., Patel, B., Kasetti, A., Shetty, K., Cho, J. H., ... & Karbowniczek, M. bioRxiv 2024
A personalized probabilistic approach to ovarian cancer diagnostics Ban, D., Housley, S. N., Matyunina, L. V., McDonald, L. D., Bae-Jump, V. L., Benigno, B. B., ... & McDonald, J. F. Gynecologic oncology 2024
Glucocorticoid-induced osteoporosis is prevented by dietary prune in female mice Chargo, N. J., Neugebauer, K., Guzior, D. V., Quinn, R. A., Parameswaran, N., & McCabe, L. R. Frontiers in Cell and Developmental Biology 2024
Proteolytic activation of fatty acid synthase signals pan-stress resolution Wei, H., Weaver, Y. M., Yang, C., Zhang, Y., Hu, G., Karner, C. M., ... & Weaver, B. P. Nature Metabolism 2024
THE ROLE OF INTRA-TUMORAL MICROBIOME IN MODULATING MUCOSAL-ASSOCIATED INVARIANT T CELL (MAIT) FUNCTION IN LUNG CANCER (Doctoral dissertation, Johns Hopkins University) Yang, X. THE ROLE OF INTRA-TUMORAL MICROBIOME IN MODULATING MUCOSAL-ASSOCIATED INVARIANT T CELL (MAIT) FUNCTION IN LUNG CANCER 2024
APOB100 transgenic mice exemplify how the systemic circulation content may affect the retina without altering retinal cholesterol input El-Darzi, N., Mast, N., Li, Y., & Pikuleva, I. A. Cellular and Molecular Life Sciences 2024
Nutritional analysis of commercially available, complete plant-and meat-based dry dog foods in the UK Brociek, R. A., Li, D., Broughton, R., & Gardner, D. S. bioRxiv 2024
Quantifying forms and functions of intestinal bile acid pools in mice Sudo, K., Delmas-Eliason, A., Soucy, S., Barrack, K. E., Liu, J., Balasubramanian, A., ... & Sundrud, M. S. bioRxiv 2024
The severity of meiotic aneuploidy is associated with altered morphokinetic variables of mouse oocyte maturation Zhu, Y., Kratka, C. R., Pea, J., Lee, H. C., Kratka, C. E., Xu, J., ... & Duncan, F. E. Human Reproduction Open 2024
Elevated SLC7A2 expression is associated with an abnormal neuroinflammatory response and nitrosative stress in Huntington’s disease Gaudet, I. D., Xu, H., Gordon, E., Cannestro, G. A., Lu, M. L., & Wei, J. Journal of Neuroinflammation 2024
The human CD47 checkpoint is targeted by an immunosuppressive Aedes aegypti salivary factor to enhance arboviral skin infectivity Marin-Lopez, A., Huck, J. D., Esterly, A. T., Azcutia, V., Rosen, C., Garcia-Milian, R., ... & Fikrig, E. Science immunology 2024
Hyperfunction of post-synaptic density protein 95 promotes seizure response in early-stage aβ pathology Yook, Y., Lee, K. Y., Kim, E., Lizarazo, S., Yu, X., & Tsai, N. P. EMBO reports 2024
Effects of Aronia melanocarpa juice-powder on hindgut function and performance in post-weaned pigs Pearce, S. C., Anderson, C. L., & Kerr, B. J. Journal of Functional Foods 2024
Thermotolerance capabilities, blood metabolomics, and mammary gland hemodynamics and transcriptomic profiles of slick-haired Holstein cattle during mid lactation in Puerto Rico Contreras-Correa, Z. E., Sánchez-Rodríguez, H. L., Arick II, M. A., Muñiz-Colón, G., & Lemley, C. O. Journal of Dairy Science 2024
In Vitro Identification of Phosphorylation Sites on TcPolβ by Protein Kinases TcCK1, TcCK2, TcAUK1, and TcPKC1 and Effect of Phorbol Ester on Activation by TcPKC of TcPolβ in Trypanosoma cruzi Epimastigotes Maldonado, E., Canobra, P., Oyarce, M., Urbina, F., Miralles, V. J., Tapia, J. C., ... & Solari, A. Microorganisms 2024
DNA stimulates SIRT6 to mono-ADP-ribosylate proteins within histidine repeats Pederson, N. J., & Diehl, K. L. bioRxiv 2024
Evidence for phosphate-dependent control of symbiont cell division in the model anemone Exaiptasia diaphana Faulstich, N. G., Deloach, A. R., Ksor, Y. B., Mesa, G. H., Sharma, D. S., Sisk, S. L., & Mitchell, G. C. mBio 2024
Glycine supplementation can partially restore oxidative stress-associated glutathione deficiency in ageing cats Ruparell, A., Alexander, J. E., Eyre, R., Carvell-Miller, L., Leung, Y. B., Evans, S. J., ... & Watson, P. British Journal of Nutrition 2024
The olfactory receptor Olfr78 promotes differentiation of enterochromaffin cells in the mouse colon Dinsart, G., Leprovots, M., Lefort, A., Libert, F., Quesnel, Y., Veithen, A., ... & Garcia, M. I. EMBO reports 2024
Microglia-mediated synaptic pruning in the nucleus accumbens during adolescence: A preliminary study of the proteomic consequences and putative female-specific pruning target Kirkland, J. M., Patel, I., & Kopec, A. M. bioRxiv 2023
Uptake of Polystyrene Nanoplastic and its Impacts on the Proteome of Salmonid cells (Master's thesis, UiT The Arctic University of Norway) Heim, O. Uptake of Polystyrene Nanoplastic and its Impacts on the Proteome of Salmonid cells 2023
Untargeted metabolomics reveal sex-specific and non-specific redox-modulating metabolites in kidneys following binge drinking Rafferty, D., de Carvalho, L. M., Sutter, M., Heneghan, K., Nelson, V., Leitner, M., ... & Puthanveetil, P. Redox Experimental Medicine 2023
Annexin A2 modulates phospholipid membrane composition upstream of Arp2 to control angiogenic sprout initiation Sveeggen, T. M., Abbey, C. A., Smith, R. L., Salinas, M. L., Chapkin, R. S., & Bayless, K. J. The FASEB Journal 2023
Sex modifies the impact of type 2 diabetes mellitus on the murine whole brain metabolome Norman, J. E., Nuthikattu, S., Milenkovic, D., & Villablanca, A. C. Metabolites 2023
A human iPSC-derived hepatocyte screen identifies compounds that inhibit production of Apolipoprotein B Liu, J. T., Doueiry, C., Jiang, Y. L., Blaszkiewicz, J., Lamprecht, M. P., Heslop, J. A., ... & Duncan, S. A. Communications Biology 2023
Methyl donor supplementation reduces phospho‐Tau, Fyn and demethylated protein phosphatase 2A levels and mitigates learning and motor deficits in a mouse model of tauopathy van Hummel, A., Taleski, G., Sontag, J. M., Feiten, A. F., Ke, Y. D., Ittner, L. M., & Sontag, E. Neuropathology and applied neurobiology 2023
Sex hormones, sex chromosomes, and microbiota: identification of Akkermansia muciniphila as an estrogen-responsive bacterium Sakamuri, A., Bardhan, P., Tummala, R., Mauvais-Jarvis, F., Yang, T., Joe, B., & Ogola, B. O. Microbiota and host 2023
Molecular signature of the ontogenic development of the prawn Macrobrachium tenellum Guerrero, D. M., Martínez-Cruz, M., Pérez-Campos, E., García-Guerrero, M., de los Santos-Romero, R., Solórzano-Mata, C., ... & Alpuche, J. PeerJ 2023
Pair bonding and disruption impact lung transcriptome in monogamous Peromyscus californicus Naderi, A., Liles, K., Burns, T., Chavez, B., Huynh-Dam, K. T., & Kiaris, H. BMC genomics 2023
Living in extreme environments: a photosynthetic and desiccation stress tolerance trade-off story, but not for everyone Gajardo, H. A., Morales, M., López, D., Luengo-Escobar, A., Machado, M., Nunes-Nesi, A., ... & Bravo, L. Authorea Preprints 2023
Resting natural killer cell homeostasis relies on tryptophan/NAD+ metabolism and HIF‐1α Pelletier, A., Nelius, E., Fan, Z., Khatchatourova, E., Alvarado‐Diaz, A., He, J., ... & Stockmann, C. EMBO reports 2023
Pressure overload induces ISG15 to facilitate adverse ventricular remodeling and promote heart failure Yerra, V. G., Batchu, S. N., Kaur, H., Kabir, M. G., Liu, Y., Advani, S. L., ... & Advani, A. The Journal of Clinical Investigation 2023
Lipid Membrane Engineering for Biotechnology (Doctoral dissertation, Aston University) Gomes Almeida, A. C. Lipid Membrane Engineering for Biotechnology 2023
Glucosylceramide is essential for Heartland and Dabie bandavirus glycoprotein-induced membrane fusion Xia, T., Wu, X., Hong, E., Jung, K., Lai, C. J., Kwak, M. J., ... & Jung, J. U. PLoS Pathogens 2023
Understanding Veillonella atypica as a potential metabolic mediator in diabetic exercise Kelly, A. Undergraduate Theses and Capstone Projects 2023
Function and regulation of a steroidogenic CYP450 enzyme in the mitochondrion of Toxoplasma gondii Asady, B., Sampels, V., Romano, J. D., Levitskaya, J., Lige, B., Khare, P., ... & Coppens, I. PLoS pathogens 2023
Metabolomic Studies in Girls With Central and Peripheral Precocious Puberty Özyurt, A. B., Reçber, T., Nemutlu, E., Buluş, D., Kır, S., Gümüşel, B. K., & Erkekoğlu, P. Fabad Journal of Pharmaceutical Sciences 2023
Overexpression of maize ZmLOX6 in Arabidopsis thaliana enhances damage-induced pentyl leaf volatile emissions that affect plant growth and interaction with aphids Tolley, J. P., Gorman, Z., Lei, J., Yeo, I. C., Nagashima, Y., Joshi, V., ... & Koiwa, H. Journal of Experimental Botany 2023
The Suppression of the KRAS G12D-Nrf2 Axis Shifts Arginine into the Phosphocreatine Energy System in Pancreatic Cancer Cells Di Giorgio, E., Choudhary, H., Ferino, A., Cortolezzis, Y., Dalla, E., D’Este, F., ... & Xodo, L. Cell Chemical Biology 2023
Modulation of the Endomembrane System by the Anticancer Natural Product Superstolide/ZJ-101 Sanchez, P. R., Head, S. A., Qian, S., Qiu, H., Roy, A., Jin, Z., ... & Liu, J. O. International journal of molecular sciences 2023
Phenothiazines rapidly induce laccase expression and lignin-degrading properties in the white-rot fungus Phlebia radiata Hirakawa, M. P., Rodriguez, A., Tran-Gyamfi, M. B., Light, Y. K., Martinez, S., Diamond-Pott, H., ... & Sale, K. L. Journal of Fungi 2023
The activity of the aryl hydrocarbon receptor in T cells tunes the gut microenvironment to sustain autoimmunity and neuroinflammation Merchak, A. R., Cahill, H. J., Brown, L. C., Brown, R. M., Rivet-Noor, C., Beiter, R. M., ... & Gaultier, A. PloS Biology 2023
Lipid droplet-associated lncRNA LIPTER preserves cardiac lipid metabolism Han, L., Huang, D., Wu, S., Liu, S., Wang, C., Sheng, Y., ... & Yang, L. Nature cell biology 2023
Prospective randomized, double-blind, placebo-controlled study of a standardized oral pomegranate extract on the gut microbiome and short-chain fatty acids Sivamani, R. K., Chakkalakal, M., Pan, A., Nadora, D., Min, M., Dumont, A., ... & Chambers, C. J. Foods 2023
Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing Heruye, S., Myslinski, J., Zeng, C., Zollman, A., Makino, S., Nanamatsu, A., ... & Hato, T. bioRxiv 2023
Anti-inflammatory activity of black soldier fly oil associated with modulation of tlr signaling: A metabolomic approach Richter, H., Gover, O., & Schwartz, B. International Journal of Molecular Sciences 2023
In vitro assays reveal inherently insecticide-tolerant termite symbionts Blanton, A. G., Perkins, S., & Peterson, B. F. Frontiers in Physiology 2023
Combined omics approaches reveal distinct mechanisms of resistance and/or susceptibility in sugar beet double haploid genotypes at early stages of beet curly top virus infection Galewski, P. J., Majumdar, R., Lebar, M. D., Strausbaugh, C. A., & Eujayl, I. A. International Journal of Molecular Sciences 2023
Plant Growth Promotion, Phytohormone Production and Genomics of the Rhizosphere-Associated Microalga, Micractinium rhizosphaerae sp Quintas-Nunes, F., Brandão, P. R., Barreto Crespo, M. T., Glick, B. R., & Nascimento, F. X. Plants 2023
Tumor-Derived Extracellular Vesicles Regulate the Fate and Function of T-Lymphocyte Via Reprogramming Lipid Metabolism Ma, F. Saint Louis University 2023
Characterizing the proteome of bullous pemphigoid blister fluid utilizing tandem mass tag labeling coupled with LC–MS/MS Solimani, F., Didona, D., Li, J., Bao, L., Patel, P. M., Gasparini, G., ... & Amber, K. T. Archives of Dermatological Research 2022
Non-invasive elevation of circulating corticosterone increases the rejection of foreign eggs in female American robins (Turdus migratorius) Turner, A. M., Di Giovanni, A. J., Antonson, N. D., Scharf, H. M., Abolins-Abols, M., & Hauber, M. E. Hormones and Behavior 2022
Trypanosoma cruzi DNA Polymerase β Is Phosphorylated In Vivo and In Vitro by Protein Kinase C (PKC) and Casein Kinase 2 (CK2) Maldonado, E., Rojas, D. A., Urbina, F., Valenzuela-Pérez, L., Castillo, C., & Solari, A. Cells 2022
NUDT22 promotes cancer growth through pyrimidine salvage and the TCA cycle Walter, M., Mayr, F., Hanna, B. M. F., Cookson, V., Mortusewicz, O., Helleday, T., & Herr, P. Oncogene 2022
Phenotypical and Functional Characterization of Prenylcysteine Oxidase 1 Like (Pcyox1l) Knockout Murine Neutrophils (Master's thesis, Harvard University) To, O. T. Harvard University 2022
Chemoproteomic identification of CO2-dependent lysine carboxylation in proteins King, D. T., Zhu, S., Hardie, D. B., Serrano-Negrón, J. E., Madden, Z., Kolappan, S., & Vocadlo, D. J. Nature Chemical Biology 2022
Identification of the O-Glycan Epitope Targeted by the Anti-Human Carcinoma Monoclonal Antibody (mAb) NEO-201 Tsang, K. Y., Fantini, M., Zaki, A., Mavroukakis, S. A., Morelli, M. P., Annunziata, C. M., & Arlen, P. M. Cancers 2022
Metabolites and Genes behind Cardiac Metabolic Remodeling in Mice with Type 1 Diabetes Mellitus Kambis, T. N., Shahshahan, H. R., & Mishra, P. K. International journal of molecular sciences 2022
Identification of a novel anti-HIV-1 protein from Momordica balsamina leaf extract Coleman, M. I., Khan, M., Gbodossou, E., Diop, A., DeBarros, K., Duong, H., ... & Powell, M. D. International Journal of Environmental Research and Public Health 2022
Loss of G0/G1 switch gene 2 (G0S2) promotes disease progression and drug resistance in chronic myeloid leukaemia (CML) by disrupting glycerophospholipid metabolism Gonzalez, M. A., Olivas, I. M., Bencomo‐Alvarez, A. E., Rubio, A. J., Barreto‐Vargas, C., Lopez, J. L., ... & Eiring, A. M. Clinical and Translational Medicine 2022
Exploratory phosphoproteomics profiling of Aedes aegypti Malpighian tubules during blood meal processing reveals dramatic transition in function Kandel, Y., Pinch, M., Lamsal, M., Martinez, N., & Hansen, I. A. Plos one 2022
Quantification of choline in serum and plasma using a clinical nuclear magnetic resonance analyzer Garcia, E., Shalaurova, I., Matyus, S. P., Wolak-Dinsmore, J., Oskardmay, D. N., & Connelly, M. A. Clinica Chimica Acta 2022
Metabolic and morphotypic trade-offs within the eco-evolutionary dynamics of Escherichia coli Zlatkov, N., Näsman, M. E. C., & Uhlin, B. E. Microbiology Spectrum 2022
Exogenous lipase administration alters gut microbiota composition and ameliorates Alzheimer’s disease-like pathology in APP/PS1 mice Menden, A., Hall, D., Hahn-Townsend, C., Broedlow, C. A., Joshi, U., Pearson, A., ... & Ait-Ghezala, G. Scientific reports 2022
The Interplay between GSK3β and Tau Ser262 Phosphorylation during the Progression of Tau Pathology Song, L., Oseid, D. E., Wells, E. A., & Robinson, A. S. International Journal of Molecular Sciences 2022
YAP mediates compensatory cardiac hypertrophy through aerobic glycolysis in response to pressure overload Kashihara, T., Mukai, R., Oka, S. I., Zhai, P., Nakada, Y., Yang, Z., ... & Sadoshima, J. The Journal of Clinical Investigation 2022
Annexin A2 Controls Lipid Composition Necessary for Junctional Stability in Response to Sphingosine 1-Phosphate (Doctoral dissertation) Sveeggen, T. Doctoral dissertation 2022
The cytoplasmic microtubule array in Neurospora crassa depends on microtubule-organizing centers at spindle pole bodies and microtubule+ end-depending pseudo-MTOCs at septa Ramírez-Cota, R., Espino-Vazquez, A. N., Rodriguez-Vega, T. C., Macias-Díaz, R. E., Callejas-Negrete, O. A., Freitag, M., ... & Mouriño-Pérez, R. R. Fungal Genetics and Biology 2022
Characterising Chinese Hamster Ovary cell extracellular vesicle production in biopharmaceutical manufacturing (Doctoral dissertation, University of Sheffield) O'Donnell, F. Plant Biotechnology Journal 2022
Enhance trial: effects of NAD3® on hallmarks of aging and clinical endpoints of health in middle aged adults: a subset analysis focused on blood cell NAD+ concentrations and lipid metabolism Roberts, M. D., Osburn, S. C., Godwin, J. S., Ruple, B. A., La Monica, M. B., Raub, B., ... & Lopez, H. L. Physiologia 2022
WI12 Rhg1 interacts with DELLAs and mediates soybean cyst nematode resistance through hormone pathways Dong, J., & Hudson, M. E. Plant Biotechnology Journal 2022
Mechanistic and biomarker studies to demonstrate immune tolerance in multiple sclerosis Docampo, M. J., Lutterotti, A., Sospedra, M., & Martin, R. Frontiers in Immunology 2022
T cell Aryl Hydrocarbon Receptor Activity Tunes the Gut Microenvironment to Sustain Autoimmunity and Neuroinflammation Merchak, A. R., Cahill, H. J., Brown, L. C., Brown, R. M., Rivet-Noor, C., Beiter, R. M., ... & Gaultier, A. bioRxiv 2022
Isolation of the mustard Napin protein Allergen Sin a 1 and characterisation of its antifungal activity Mignone, G., Shwaiki, L. N., Arendt, E. K., & Coffey, A. Biochemistry and Biophysics Reports 2022
Molekularbiologische Untersuchungen von Vibrio spp Özkök, G. Molekularbiologische Untersuchungen von Vibrio spp. auf das Vorhandensein von mobilen mcr-Genen und deren Klassifizierung 2022
Immunoproteomics characterization of Leishmania panamensis proteins for potential clinical diagnosis of mucosal Leishmaniasis Caraballo‐Guzmán, A. J., Ospina‐Villa, J. D., Cuesta‐Caicedo, A. P., & Sánchez‐Jiménez, M. M. Parasite Immunology 2021
Hyperactivation of the proteasome core particle in Caenorhabditis elegans protects against proteotoxic stress and extends lifespan Anderson, R., Bradley, T., & Smith, D. Research Square 2021
Impact of alanyl-tRNA synthetase editing deficiency in yeast Zhang, H., Wu, J., Lyu, Z., & Ling, J. Nucleic acids research 2021
An interdisciplinary approach for developing novel methods to study silks (Doctoral dissertation, University of Oxford) Oh, Y. J. University of Oxford 2021
Effect of arabinogalactan on the gut microbiome: A randomized, double-blind, placebo-controlled, crossover trial in healthy adults Chen, O., Sudakaran, S., Blonquist, T., Mah, E., Durkee, S., & Bellamine, A. Nutrition 2021
Insect derived extra oral GH32 plays a role in susceptibility of wheat to Hessian fly Subramanyam, S., Nemacheck, J. A., Bernal-Crespo, V., & Sardesai, N. Scientific Reports 2021
Characterization of CYCLOPHILLIN38 shows that a photosynthesis-derived systemic signal controls lateral root emergence Duan, L., Pérez-Ruiz, J. M., Cejudo, F. J., & Dinneny, J. R. Plant Physiology 2021
External morphological stages and protein variations along with the embryonic development of the longarm river prawn Macrobrachium tenellum (Smith, 1871) García-Guerrero, M. U., Mateos-Guerrero, D. M., Alpuche-Osorno, J. J., & Santos-Romero, R. B. Latin american journal of aquatic research 2021
Alternative glycosylation controls endoplasmic reticulum dynamics and tubular extension in mammalian cells Kerselidou, D., Dohai, B. S., Nelson, D. R., Daakour, S., De Cock, N., Hassoun, Z. A. O., ... & Twizere, J. C. Science advances 2021
Extracellular vesicles from the human natural killer cell line NK3 Cochran, A. M., & Kornbluth, J. Frontiers in Cell and Developmental Biology 2021
BRCA1 antibodies matter Yang, J., Qi, L., Chiang, H. C., Yuan, B., Li, R., & Hu, Y. International Journal of Biological Sciences 2021
Control of ribosomal protein synthesis by the Microprocessor complex Jiang, X., Prabhakar, A., Van der Voorn, S. M., Ghatpande, P., Celona, B., Venkataramanan, S., ... & Hata, A. bioRxiv 2021
Calcium homeostasis and stable fatty acid composition underpin heatwave tolerance of the keystone polychaete Hediste diversicolor Madeira, D., Fernandes, J. F., Jeronimo, D., Ricardo, F., Santos, A., Domingues, M. R., & Calado, R. Environmental Research 2021
The Vibrio cholerae type six secretion system is dispensable for colonization but affects pathogenesis and the structure of zebrafish intestinal microbiome Breen, P., Winters, A. D., Theis, K. R., & Withey, J. H. Infection and Immunity 2021
Dimethyl fumarate treatment restrains the antioxidative capacity of T cells to control autoimmunity Liebmann, M., Korn, L., Janoschka, C., Albrecht, S., Lauks, S., Herrmann, A. M., ... & Klotz, L. Brain 2021
Novakomyces olei sp. nov., the First Member of a Novel Taphrinomycotina Lineage Čadež, N., Dlauchy, D., Tome, M., & Péter, G. Microorganisms 2021
Extracellular vesicles secreted by TDO2-augmented fibroblasts regulate pro-inflammatory response in macrophages Peck, K. A., Ciullo, A., Li, L., Li, C., Morris, A., Marbán, E., & Ibrahim, A. G. Frontiers in Cell and Developmental Biology 2021
A non-probiotic fermented soy product reduces total and ldl cholesterol: A randomized controlled crossover trial Jung, S. M., Haddad, E. H., Kaur, A., Sirirat, R., Kim, A. Y., Oda, K., ... & Sabaté, J. Nutrients 2021
Altered glucuronidation deregulates androgen dependent response profiles and signifies castration resistance in prostate cancer Zimmer, B. M., Howell, M. E., Ma, L., Enders, J. R., Lehman, D., Corey, E., ... & Simpson, M. A. Oncotarget 2021
Investigating Plant Tolerance for the Management of Insect Pests in Rice Villegas, J. M. Investigating Plant Tolerance for the Management of Insect Pests in Rice 2021
Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales Belmont-Monroy, L., Saitz-Rojas, W., Soria-Bustos, J., Mickey, A. S., Sherman, N. E., Orsburn, B. C., ... & Santiago, A. E. PLoS pathogens 2020
Macrophage-associated lipin-1 promotes β-oxidation in response to proresolving stimuli Schilke, R. M., Blackburn, C. M., Rao, S., Krzywanski, D. M., Finck, B. N., & Woolard, M. D. Immunohorizons 2020
Lipin-1 regulates lipid catabolism in pro-resolving macrophages Schilke, R. M., Blackburn, C. M., Rao, S., Krzywanski, D., Finck, B. N., & Woolard, M. D. bioRxiv 2020
Ketone bodies are mildly elevated in subjects with type 2 diabetes mellitus and are inversely associated with insulin resistance as measured by the lipoprotein insulin resistance index Garcia, E., Shalaurova, I., Matyus, S. P., Oskardmay, D. N., Otvos, J. D., Dullaart, R. P., & Connelly, M. A. Journal of Clinical Medicine 2020
Summative and ultimate analysis of live leaves from southern US forest plants for use in fire modeling Matt, F. J., Dietenberger, M. A., & Weise, D. R. Energy & Fuels 2020
Disruption of CYCLOPHILIN 38 function reveals a photosynthesis-dependent systemic signal controlling lateral root emergence Duan, L., Pérez-Ruiz, J. M., Cejudo, F. J., & Dinneny, J. R. bioRxiv 2020
B cell-intrinsic epigenetic modulation of antibody responses by dietary fiber-derived short-chain fatty acids Sanchez, H. N., Moroney, J. B., Gan, H., Shen, T., Im, J. L., Li, T., ... & Casali, P. Nature communications 2020
The deregulation of Fyn kinase in Alzheimer’s Disease Taleski, G. THE UNIVERSITY OF NEWCASTLE AUSTRALIA 2020
Bioprocessing of soybean seed-coats for production of proteins & omega-3 fatty acids using Pythium isolates Burkey, C. N. Bowling Green State University 2020
Insulin resistance does not impair mechanical overload-stimulated glucose uptake, but does alter the metabolic fate of glucose in mouse muscle Weyrauch, L. A., McMillin, S. L., & Witczak, C. A. International journal of molecular sciences 2020
Laboratory evaluation of larvicidal and oviposition deterrent properties of edible plant oils for potential management of Aedes aegypti (Diptera: Culicidae) in drinking water containers Njoroge, T. M., & Berenbaum, M. R. Journal of medical entomology 2019
Effects of microbial phytase on mucin synthesis, gastric protein hydrolysis, and degradation of phytate along the gastrointestinal tract of growing pigs Mesina, V. G., Lagos, L. V., Sulabo, R. C., Walk, C. L., & Stein, H. H. Journal of animal science 2019
The Mechanism of Action of a New Class of Nucleoside Analogs Targeting Gastrointestinal Tumours (Doctoral dissertation, Université d'Ottawa/University of Ottawa) Collins, L. The Mechanism of Action of a New Class of Nucleoside Analogs Targeting Gastrointestinal Tumours 2019
Regulation of toxic shock syndrome toxin‐1 by the accessory gene regulator in Staphylococcus aureus is mediated by the repressor of toxins Tuffs, S. W., Herfst, C. A., Baroja, M. L., Podskalniy, V. A., DeJong, E. N., Coleman, C. E., & McCormick, J. K. Molecular Microbiology 2019
Conformational differences between functional human immunodeficiency virus envelope glycoprotein trimers and stabilized soluble trimers Castillo-Menendez, L. R., Nguyen, H. T., & Sodroski, J. Journal of Virology 2019
Identification of a novel function of hepatic long-chain acyl-CoA synthetase-1 (ACSL1) in bile acid synthesis and its regulation by bile acid-activated farnesoid X receptor Singh, A. B., Dong, B., Xu, Y., Zhang, Y., & Liu, J. Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids 2019
Parkinson’s disease-associated LRRK2-G2019S mutant acts through regulation of SERCA activity to control ER stress in astrocytes Lee, J. H., Han, J. H., Kim, H., Park, S. M., Joe, E. H., & Jou, I. Acta neuropathologica communications 2019
Functional characterization of the mouse Serpina1 paralog DOM-7 Jülicher, K., Wähner, A., Haase, K., Barbour, K. W., Berger, F. G., Wiehlmann, L., ... & Eggenschwiler, R. Biological Chemistry 2018
Release of growth factors into root canal by irrigations in regenerative endodontics Zeng, Q., Nguyen, S., Zhang, H., Chebrolu, H. P., Alzebdeh, D., Badi, M. A., ... & Yang, M. Journal of endodontics 2016
Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein Herrera, V. L., Steffen, M., Moran, A. M., Tan, G. A., Pasion, K. A., Rivera, K., ... & Ruiz-Opazo, N. BMC Molecular Biology 2016
HDAC4 influences the DNA damage response and counteracts senescence by assembling with HDAC1/HDAC2 to control H2BK120 acetylation and homology-directed repair. Di Giorgio, E., Dalla, E., Tolotto, V., D’Este, F., Paluvai, H., Ranzino, L., & Brancolini, C. Nucleic Acids Research 2024
Polyamine metabolism impacts T cell dysfunction in the oral mucosa of people living with HIV Mahalingam, S. S., Jayaraman, S., et al Nature Communications 2023
Neddylation is required for perinatal cardiac development through stimulation of metabolic maturation Zou, J., Wang, W., et al. Cell Reports 2023
Metasecretome and biochemical analysis of consortium PM-06 during the degradation of nixtamalized maize pericarp Guzmán-Pedraza, R., Peralta, S. M., et al. Biocatalysis and Agricultural Biotechnology 2023
Synergistic Combined-proteomics Guided Mapping strategy identifies mTOR mediated phosphorylation of LARP1 in nutrient responsiveness and dilated cardiomyopathy Tan, M. K. M., Stewart, C. L., et al. bioRxiv 2022
Fatty Acid and Antioxidant Profile of Eggs from Pasture-Raised Hens Fed a Corn- and Soy-Free Diet and Supplemented with Grass-Fed Beef Suet and Liver Sergin, S., Jambunathan, V., et al. Foods 2022
Water-soluble saponins accumulate in drought-stressed switchgrass and may inhibit yeast growth during bioethanol production Chipkar, S., Smith, K., Biotechnology for Biofuels and Bioproducts 2022
A comprehensive biochemical characterization of settlement stage leptocephalus larvae of bonefish (Albula vulpes) Uribe, V, Wills, P. S, Shenker, J. M, et al Journal of Fish Biology 2021
Choleoeimeria pogonae Alters the Bile Acid Composition of the Central Bearded Dragon (Pogona vitticeps) Andrea N. Johnston, Anke C. Stöhr, et al Journal of Herpetological Medicine and Surgery 2021
External morphological stages and protein variations along with the embryonic development of the longarm river prawn Macrobrachium tenellum García-Guerrero, M. U., Mateos-Guerrero, D. M., et al. Latin american journal of aquatic research 2021
Bacterial–fungal interactions revealed by genome-wide analysis of bacterial mutant fitness Pierce, E. C., Morin, M., et al. Nature microbiology 2021
Mechanisms underlying neonate-specific metabolic effects of volatile anesthetics Stokes, J., Freed, A., et al. Elife 2021
Experimental microbial dysbiosis does not promote disease progression in SIV-infected macaques Alexandra M. Ortiz et al. Nature Medicine 2018
Multi‐omics identify xanthine as a pro‐survival metabolite for nematodes with mitochondrial dysfunction Anna Gioran et al. EMBO Journal 2019
Sarcosine Is Uniquely Modulated by Aging and Dietary Restriction in Rodents and Humans Ryan O.Walters et al. Cell Reports 2018
Modulation of the tick gut milieu by a secreted tick protein favors Borrelia burgdorferi colonization Sukanya Narasimhan et al. Nature Communications 2017
Microbial dysbiosis associated with impaired intestinal Na+/H+ exchange accelerates and exacerbates colitis in ex-germ free mice Christy A. Harrison et al. Mucosal immunology 2018
Parkinson’s disease-associated LRRK2-G2019S mutant acts through regulation of SERCA activity to control ER stress in astrocytes Jee Hoon Lee et al. Acta Neuropathologica Communications 2019
3-D physiomimetic extracellular matrix hydrogels provide a supportive microenvironment for rodent and human islet culture K.Jiang et al. Biomaterials 2019
The yeast protein Mam33 functions in the assembly of the mitochondrial ribosome Journal of Biological Chemistry 2019
Functional Characterization of Propeptides in Plant Subtilases as Intramolecular Chaperones and Inhibitors of the Mature Protease  Michael Meyer et al. Journal of Biological Chemistry 2016
Assessment of Fasciola hepatica glutathione S-transferase as an antigen for serodiagnosis of human chronic fascioliasis Vasti Aguayo et al. Acta Tropica 2018
Inactivation of myeloperoxidase by benzoic acid hydrazide Jiansheng Huang et al. Archives of Biochemistry and Biophysics 2015
Quantitative Proteomic Analysis of Cellular Responses to a Designed Amino Acid Feed in a Monoclonal Antibody Producing Chinese Hamster Ovary Cell Line Fatemeh Torkashvand et al. Iranian Biomedical Journal 2018
Anticoccidial effect of apple cider vinegar on broiler chicken: an organic treatment to measure anti-oxidant effect F.M.F. Hayajneh et al. Polish Journal of Veterinary Sciences 2018
Epithelial WNT2B and Desert Hedgehog are necessary for human colonoid regeneration after bacterial cytotoxin injury Julie G. In et al. bioRxiv 2018
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