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Step by Step of Glycolysis

Glycolysis is divided into two reaction stages. The first stage is the preparatory phase of glycolysis, which includes two phosphorylation steps where a six-carbon sugar is cleaved into two molecules of three-carbon sugar. Ultimately, both molecules are converted into 3-phosphoglyceraldehyde, consuming two molecules of ATP.

Glucose Phosphorylation

Glucose phosphorylation is the first crucial step in the process of glycolysis, where glucose is converted into glucose-6-phosphate (G6P) by the enzyme hexokinase (HK). This reaction is catalyzed by hexokinase, which utilizes Mg2+ ions as cofactors and consumes one molecule of ATP. Importantly, this reaction is irreversible, ensuring that glucose entering the cell remains trapped within it.

Hexokinase exhibits broad substrate specificity, not limited to D-glucose; it can catalyze the phosphorylation of other hexose sugars as well. Present in all cells, hexokinase acts as a regulatory enzyme. Its product, G6P, along with ADP, can allosterically inhibit the enzyme, providing feedback regulation. Notably, hexokinase is not inhibited by G6P.

In animal tissues, hexokinase exists in several isoforms (types I, II, III, and IV), each with tissue-specific distribution. Type I is predominantly found in the brain and kidneys, type II in skeletal and cardiac muscles, type III in the liver and lungs, while type IV, also known as glucokinase (GCK), is exclusively present in the liver. Isoforms I, II, and III are mainly found in tissues incapable of glycogen synthesis. Inorganic phosphate serves as an inhibitor for types I, II, and III hexokinase when in contact with G6P and ADP.

Glucokinase (GCK), or type IV hexokinase, exhibits higher specificity for glucose and is primarily expressed in the liver. Its synthesis is induced by insulin. Reduced synthesis of GCK occurs in conditions like cell damage or diabetes, leading to impaired glucose synthesis and degradation.

In humans, hexokinase genes include type I (HK1), type II (HK2), type III (HK3), and type IV (GCK). Additionally, hexokinase domain-containing protein 1 (HKDC1) is considered a fifth hexokinase enzyme.

Isomerization of Glucose 6- Phosphate (G6P) to Fructose 6- Phosphate (F6P)

The isomerization of glucose-6-phosphate (G6P) to fructose-6-phosphate (F6P) is a crucial step in the glycolytic pathway. This reaction is catalyzed by the enzyme phosphoglucose isomerase (PGI), also known as phosphohexose isomerase or glucose phosphate isomerase.

  • Substrate Recognition: Initially, the enzyme phosphoglucose isomerase (PGI) recognizes and binds to the substrate, glucose-6-phosphate (G6P), in the active site of the enzyme.
  • Isomerization Reaction: Once bound to the active site, PGI catalyzes the conversion of G6P into fructose-6-phosphate (F6P). This is achieved through a series of intramolecular rearrangements, where the phosphate group and hydrogen atoms are shifted within the glucose molecule, resulting in the formation of fructose-6-phosphate.
  • Product Release: After the isomerization reaction, the enzyme releases the newly formed fructose-6-phosphate from its active site, making it available for further metabolic processes within the glycolytic pathway.

The isomerization of G6P to F6P is an essential step in glycolysis for several reasons:

  • Pathway Continuation: The conversion of G6P to F6P allows the glycolytic pathway to proceed, as F6P is a key intermediate in subsequent reactions.
  • Favorable Reaction Equilibrium: The isomerization reaction catalyzed by PGI is highly favorable, with the equilibrium strongly favoring the formation of F6P. This ensures efficient conversion of G6P to F6P within the cell.
  • Regulation: While the isomerization reaction itself is not regulated, the activity of phosphoglucose isomerase (PGI) can be influenced by factors such as substrate concentration and the presence of allosteric effectors. However, PGI is generally not a rate-limiting enzyme in glycolysis.

The glycolysis pathway divided into two parts.The glycolysis pathway divided into two parts. a) The preparatory phase where glucose is converted into three-carbon sugar phosphates. b) The pay-off phase with generation of the high-energy molecules ATP and NADH. The end product is pyruvate (Røe et al., 2006)

Phosphorylation of Fructose 6-Phosphate (F6P) to form Fructose 1,6-Bisphosphate (FBP)

The phosphorylation of fructose-6-phosphate (F6P) to form fructose 1,6-bisphosphate (F1,6BP) is catalyzed by the enzyme phosphofructokinase (PFK). This reaction is a crucial step in glycolysis, consuming a second ATP molecule and irreversibly committing the glucose molecule to further metabolic breakdown. Here's a detailed explanation:

  • Enzyme Catalysis: The enzyme phosphofructokinase (PFK) facilitates the transfer of a phosphate group from ATP to the carbon-1 position of fructose-6-phosphate (F6P), resulting in the formation of fructose 1,6-bisphosphate (F1,6BP).
  • Cofactor Requirement: PFK requires Mg2+ ions as cofactors for its enzymatic activity. These ions help stabilize the transition state of the reaction and facilitate phosphate transfer between ATP and F6P.
  • Irreversible Reaction: The phosphorylation of F6P by PFK is an irreversible reaction, meaning it cannot easily proceed in the reverse direction under physiological conditions. This irreversible step ensures the directionality of glycolysis, committing glucose to further metabolic breakdown.
  • Regulation: PFK is a regulatory enzyme and a key control point in glycolysis. Its activity is influenced by various factors. For instance, high concentrations of ATP inhibit PFK activity, while AMP can relieve this inhibition. Additionally, pH levels can affect PFK activity, with acidic conditions inhibiting its function. This regulatory mechanism helps adjust glycolytic flux according to the cellular energy demands and metabolic state.
  • Isozymes: In rabbits, PFK exists in three isoforms: PFK-A, PFK-B, and PFK-C. These isozymes exhibit tissue-specific expression patterns and sensitivities to allosteric effectors. PFK-A is predominantly found in cardiac and skeletal muscles, PFK-B in the liver and erythrocytes, and PFK-C in the brain. Each isoform may have distinct regulatory properties and sensitivities to inhibitors and activators.

Cleavage of Fructose 1,6-Bisphosphate (FBP) to form Glyceraldehyde 3-Phosphate (GAP) and Dihydroxyacetone Phosphate (DHAP)

The cleavage of fructose 1,6-bisphosphate (FBP) to form glyceraldehyde 3-phosphate (GAP) and dihydroxyacetone phosphate (DHAP) is a key step in the glycolysis pathway, which is a central metabolic pathway for energy production in cells.

This reaction is catalyzed by the enzyme aldolase and occurs in the cytoplasm of the cell. Aldolase facilitates the breaking of the six-carbon sugar molecule, fructose 1,6-bisphosphate, into two three-carbon molecules, glyceraldehyde 3-phosphate (GAP) and dihydroxyacetone phosphate (DHAP).

The reaction can be represented as follows:

Fructose 1,6-bisphosphate (FBP) -> Glyceraldehyde 3-phosphate (GAP) + Dihydroxyacetone phosphate (DHAP)

The resulting products, GAP and DHAP, are both important intermediates in glycolysis. While GAP continues directly through the glycolytic pathway, DHAP is isomerized to form another molecule of GAP, allowing for the eventual conversion of both DHAP molecules into GAP. This ensures the continuation of the glycolytic pathway with the production of high-energy compounds such as ATP and NADH.

Oxidation of Glyceraldehyde 3- Phosphate (GAP)

The oxidation of glyceraldehyde-3-phosphate (GAP) involves the transfer of electrons from GAP to an electron acceptor, typically NAD+ (nicotinamide adenine dinucleotide) or FAD (flavin adenine dinucleotide). This process is a crucial step in cellular respiration, specifically in the glycolysis pathway.

During glycolysis, GAP is produced from the splitting of glucose and serves as an intermediate molecule. Its oxidation is catalyzed by the enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH). In this reaction, GAP is oxidized to 1,3-bisphosphoglycerate (1,3-BPG) while reducing NAD+ to NADH. This step also involves the phosphorylation of GAP, resulting in the formation of 1,3-BPG, which has higher energy content due to the addition of a phosphate group.

The overall reaction for the oxidation of GAP can be summarized as follows:

Glyceraldehyde-3-phosphate (GAP) + NAD+ + Pi -> 1,3-Bisphosphoglycerate (1,3-BPG) + NADH + H+

This reaction is exergonic, meaning it releases energy that can be used by the cell to produce ATP (adenosine triphosphate) through subsequent steps in glycolysis and cellular respiration.

Transformation of 1,3- Diphosphoglyceric Acid to 3-Phosphoglyceric Acid (3-PG)

The conversion of 1,3-bisphosphoglycerate (1,3-BPG) to 3-phosphoglycerate (3-PG) is a pivotal step in the glycolysis pathway, where high-energy phosphate bonds are utilized to generate ATP (adenosine triphosphate) and NADH (nicotinamide adenine dinucleotide).

This reaction is catalyzed by the enzyme phosphoglycerate kinase and involves the transfer of a phosphate group from 1,3-BPG to ADP (adenosine diphosphate), resulting in the formation of ATP and 3-PG. The overall reaction can be represented as follows:

1,3-Bisphosphoglycerate (1,3-BPG) + ADP -> 3-Phosphoglycerate (3-PG) + ATP

The conversion of 1,3-BPG to 3-PG marks the first ATP-generating step in glycolysis. The energy released from the transfer of the phosphate group to ADP is used to phosphorylate ADP, producing ATP. Additionally, the conversion of 1,3-BPG to 3-PG also involves the oxidation of the aldehyde group of 1,3-BPG to a carboxylic acid group in 3-PG, resulting in the reduction of NAD+ to NADH.

Overall, this reaction plays a critical role in glycolysis by generating ATP, which serves as an immediate energy source for cellular processes, and NADH, which can be further utilized in oxidative phosphorylation to produce more ATP.

Conversion of 3-Phosphoglyceric acid (3-PG) to 2-Phosphoglyceric acid (2-PG)

The conversion of 3-phosphoglycerate (3-PG) to 2-phosphoglycerate (2-PG) is a crucial step in the glycolysis pathway, occurring downstream of the ATP-generating reactions and preceding the final steps leading to pyruvate formation.

This conversion is catalyzed by the enzyme phosphoglycerate mutase, which facilitates the transfer of a phosphate group from the third carbon atom of 3-PG to the second carbon atom, resulting in the formation of 2-PG.

The overall reaction can be represented as follows:

3-Phosphoglycerate (3-PG) <-> 2-Phosphoglycerate (2-PG)

This reversible isomerization reaction involves the rearrangement of the phosphate group within the molecule, resulting in the conversion of 3-PG to 2-PG. The enzyme phosphoglycerate mutase plays a critical role in this process by catalyzing the transfer of the phosphate group, which occurs via a phosphorylated enzyme intermediate.

The conversion of 3-PG to 2-PG contributes to the preparatory phase of glycolysis by rearranging the carbon skeleton of the molecule, setting the stage for subsequent reactions leading to the production of ATP and pyruvate. Additionally, this reaction ensures the continuation of the glycolytic pathway, ultimately yielding high-energy compounds that can be further utilized by the cell for various metabolic processes.

Conversion of 2-Phosphoglyceric Acid (2-PG) to Phosphoenolpyruvic Acid (PEP)

The conversion of 2-phosphoglyceric acid (2-PG) to phosphoenolpyruvic acid (PEP) is a crucial step in the glycolysis pathway, occurring during the transition from the energy-yielding phase.

This conversion is catalyzed by the enzyme enolase, which catalyzes the dehydration of 2-PG. Enolase facilitates the removal of a water molecule from 2-PG, resulting in the formation of phosphoenolpyruvic acid (PEP). This dehydration reaction leads to the formation of a double bond between the second and third carbon atoms of the molecule.

The overall reaction can be represented as follows:

2-Phosphoglyceric acid (2-PG) -> Phosphoenolpyruvic acid (PEP) + H2O

Phosphoenolpyruvic acid (PEP) is a high-energy compound in glycolysis due to its high phosphoryl-transfer potential. It serves as a crucial intermediate in subsequent reactions, including the conversion to pyruvate and the generation of ATP.

The conversion of 2-PG to PEP plays a pivotal role in maintaining the flow of carbon through the glycolytic pathway and in providing high-energy intermediates for ATP production, ultimately supporting various cellular metabolic processes.

Phosphoenolpyruvate (PEP) is Converted to Pyruvate and Produces an ATP Molecule

The conversion of phosphoenolpyruvate (PEP) to pyruvate and the concurrent production of an ATP molecule occurs as part of the final steps in the glycolysis pathway, contributing to the net production of ATP.

This conversion is catalyzed by the enzyme pyruvate kinase, which facilitates the transfer of a phosphate group from PEP to ADP, resulting in the formation of pyruvate and ATP. The overall reaction can be represented as follows:

Phosphoenolpyruvate (PEP) + ADP -> Pyruvate + ATP

Pyruvate kinase is a key regulatory enzyme in glycolysis, and its activity is often regulated by allosteric effectors and hormonal signals to match cellular energy demands. The conversion of PEP to pyruvate represents the final step in the glycolytic pathway, where the high-energy phosphate bond of PEP is utilized to generate ATP through substrate-level phosphorylation.

Pyruvate serves as a central metabolite with multiple metabolic fates depending on cellular conditions. It can be further metabolized through aerobic respiration to generate additional ATP via the tricarboxylic acid (TCA) cycle and oxidative phosphorylation, or it can undergo fermentation under anaerobic conditions to regenerate NAD+ and sustain glycolytic flux.

Reference

  1. Røe, Kathrine. In vivo Magnetic Resonance Spectroscopy and Diffusion Weighted Magnetic Resonance Imaging for Non-Invasive Monitoring of Treatment Response of Subcutaneous HT29 Xenografts in Mice. MS thesis. Institutt for elektronikk og telekommunikasjon, 2006.
* For Research Use Only. Not for use in diagnostic procedures.
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